Research Interests:
Post-translational modification of lysine residues by acetylation and ubiquitination plays a central role in numerous biological processes. Our research centers on two examples of lysine modification: the Sir2 class of NAD+-dependent lysine deacetylases and the enzymes that ubiquitinate and deubiquitinate protein substrates. We use x-ray crystallography, together with biochemical, biophysical and genetic analysis, to gain insight into the enzymatic mechanisms and protein-protein interactions underlying these processes. |
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Acetylation of lysine residues plays a regulatory role in many processes, most notably in the regulation of mRNA transcription. The Sir2 enzymes, known as sirtuins, are NAD+-dependent deacetylases that regulate numerous processes such as transcriptional silencing in yeast, lifespan regulation, fat mobilization, and enzyme activity. We use a combination of crystallography and biochemical analysis to study the enzymatic mechanism and how it is regulated by inhibitors and metabolites. We are also studying the alternative reactions that some sirtuins catalyze, such as ADP ribosylation and lysine de-propionylation.
The attachment of the small protein, ubiquitin, to lysine residues serves a variety of signaling functions. The ubiquitin modification can consist of a single ubiquitin or a polyubiquitin chain in which the C-terminus of one ubiquitin is covalently linked to one of seven lysine residues on the next. The particular linkage type determines biological function: K48-linked polyubiquitin chains target proteins for destruction by the proteasome, whereas K63-linked chains play a non-degradative role in DNA damage tolerance and NF-kB activation. We study the structural basis for both the assembly and disassembly of linkage-specific polyubiquitin chains, as well as the way in which particular chain topologies are recognized in the cell. We are also interested in the mechanisms underlying deubiquitination, including the structural basis for activation of ubiquitin hydrolases by partner proteins and the basis for substrate selectivity.
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Samara NL, Datta AB, Berndsen CE, Zhang X, Yao T, Cohen RE, Wolberger C (2010) Structural insights into the assembly and function of the SAGA deubiquitinating module. Science 328:1025-1029.
AB Datta, GL Hura, C Wolberger (2009) The Structure and Conformation of Lys63-Linked Tetraubiquitin.
J. Mol. Biol. 392:1117-1125.
W.F. Hawse , K.G. Hoff, D. Fatkins , A. Daines, O.V. Zubkova, V.L. Schramm , W. Zheng, and C. Wolberger (2008) Structural Insights Into Intermediate Steps in the Sir2 Deacetylation Reaction." Structure 16:1368-1377.
Feeser, E., and C. Wolberger. (2008) Insights into transcriptional silencing and telomere length regulation from the structure of the Rap-1 C-terminus. J. Mol. Biol. 380: 520-531.
Eddins, M.J., C.M. Carlile, K.M. Gomez, C.M. Pickart, and C. Wolberger. (2006) Mms2/Ubc13 covalently bound to ubiquitin: structural basis of linkage-specific polyubiquitin chain formation. Nat. Struct. Mol. Biol. 13: 915-920.
Avalos J.L., K.M. Bever, and C. Wolberger. (2005) Mechanism of sirtuin inhibition by nicotinamide: altering the NAD(+) cosubstrate specificity of a Sir2 enzyme. Mol Cell. 17:855-868.
Avalos, J., J. Boeke, and C. Wolberger. (2004) Structural basis for the mechanism and regulation of Sir2 enzymes. Mol. Cell 12:639-648. |
