All Software
N.B. These pages are under almost continual re-construction! To stay current on the state of the software, subscribe to the X-rayLab email list.The old software pages are still available here, but may not be kept up to date.
Click on a link below to see the software within that category
- All software
- FOSS software (What is FOSS?)
- Academic licensed software
- Proprietary software
- Unknown licensed software
- Crystallography
- Miscellaneous
- Modelling
- Molecular Biology and Biochemistry
Click on program name for more information
| Program | License type | Web page | Manual | Versions | Operating systems | /prog/setup name | |
|---|---|---|---|---|---|---|---|
| Crystallography | Data processing | ||||||
| DPS | FOSS | Web | Manual | 2.0, 2, 1.31 | GNU/Linux IRIX | dps | |
| HKL | proprietary | Web | Manual | 2000_696, 2000_695b, 2000_692i | GNU/Linux IRIX | hkl | |
| LaueView | unknown checking | None | Manual | 2.5 | IRIX | laueview | |
| Mosflm | FOSS | Web | Manual | 6.2.3, 6.2.2, 6.11, 6.10, 6.1 | GNU/Linux IRIX | mosflm | |
| novel_R | unknown checking | None | Manual | N/A | GNU/Linux | novel | |
| Strategy | proprietary | Web | Manual | N/A | IRIX | strategy | |
| XDS | proprietary | Web | Manual | 12.31.2008 | GNU/Linux | xds | |
| Structure determination | |||||||
| AMoRe | FOSS | None | Manual | 9, 8, 7, 10, old | GNU/Linux | amore | |
| ARP/wARP | FOSS | Web | Manual | 6.1, | GNU/Linux IRIX | arp | |
| CCP4 | FOSS | Web | Manual | 6.0.2, 6.0.1, 5.0.2, 5.0 | GNU/Linux IRIX | ccp4 | |
| cctbx | FOSS | Web | Manual | 6.0.2, 6.0.1, 5.0.2, 5.0, 3.5 | GNU/Linux | ccp4i | |
| Chooch | FOSS | Web | Manual | 5.0.1 | GNU/Linux | chooch | |
| CNS | academic | Web | Manual | isac, 1.2, 1.1, 1.0, 1, 0.9a | GNU/Linux IRIX | cns | |
| CONVROT | unknown checking | None | None | N/A | GNU/Linux IRIX | convrot | |
| EPMR | unknown checking | None | Manual | 2.5 | GNU/Linux IRIX | epmr | |
| FFFEAR | unknown checking | Web | Manual | 1.9, 1.1 | IRIX | fffear | |
| MADSYS | unknown checking | None | Manual | N/A | GNU/Linux IRIX | madsys | |
| MAID | FOSS | Web | Manual | 27may05, | GNU/Linux IRIX | maid | |
| MAPUTILS | unknown checking | Web | None | N/A | IRIX | maputils | |
| MOLREP | FOSS | Web | Manual | 7.1, 7.0, 6.1 | GNU/Linux IRIX | molrep | |
| phaser | FOSS | Web | Manual | 2.1.1 | GNU/Linux | phaser | |
| PHENIX | academic | Web | Manual | 1.3rc2 | GNU/Linux | phenix | |
| SHELX | academic | Web | Manual | 97 | IRIX | shelx | |
| SnB | proprietary | Web | Manual | 2.1 | GNU/Linux IRIX | snb | |
| SOLVE/RESOLVE | proprietary | Web | Manual | 2.13, 2.06, 2.03, 2.02 | GNU/Linux IRIX | solve | |
| USF | proprietary | Web | Manual | N/A | GNU/Linux IRIX | usf | |
| X-plor | academic | Web | Manual | nih, isac, 3.8_isac, 3.851 | GNU/Linux IRIX | xplor | |
| XtalView | unknown checking | Web | Manual | 4.1, 4.0, 3.2 | GNU/Linux IRIX | xtalview | |
| Structure fitting | |||||||
| Coot | FOSS | Web | Manual | 0.1.3 | GNU/Linux | coot | |
| O | proprietary | Web | Manual | 9, | GNU/Linux IRIX | o | |
| xfit | unknown checking | Web | Manual | 4.0, | GNU/Linux | N/A | |
| Structure quality | |||||||
| DDQ | unknown checking | Web | Manual | 2.0 | GNU/Linux IRIX | ddq | |
| Procheck | FOSS | Web | Manual | N/A | GNU/Linux | procheck | |
| WHATCHECK | unknown checking | Web | None | 1.1.14, 1.1.15 | IRIX | whatcheck | |
| Miscellaneous | Data Analysis | ||||||
| ATSAS | proprietary | Web | Manual | 2.1 | GNU/Linux IRIX | atsas | |
| PAW | FOSS | Web | Manual | 2.12/22 | GNU/Linux IRIX | paw | |
| Miscellaneous | |||||||
| /prog/setup | FOSS | Web | Manual | 1.59 | GNU/Linux IRIX | /prog/setup | |
| ProgPorts | FOSS | Web | Manual | 10, 16, 18, jedi | GNU/Linux | progports | |
| XRayView | unknown checking | Web | Manual | 2.3 | IRIX | xrayview | |
| Modelling | Structural analysis | ||||||
| APBS | FOSS | Web | Manual | 0.3.1 | GNU/Linux IRIX | apbs | |
| CSD | proprietary | None | Manual | 5.26, 5.25, 2006 | GNU/Linux IRIX | csd | |
| Curves | unknown checking | Web | Manual | 5.1 | IRIX | curves | |
| DelPhi | unknown checking | Web | Manual | 4 | GNU/Linux IRIX | delphi | |
| DSSP | unknown checking | Web | Manual | N/A | GNU/Linux | dssp | |
| MODELLER | proprietary | Web | Manual | 7.7 | GNU/Linux IRIX | modeller | |
| Mogul | proprietary | Web | Manual | beta | GNU/Linux | mogul | |
| naccess | unknown checking | None | None | 2.1.1 | GNU/Linux | naccess | |
| NEWHELIX | unknown checking | None | Manual | 93 | GNU/Linux IRIX | newhel | |
| X3DNA | unknown checking | Web | Manual | 1.4.3, 1.2.1 | GNU/Linux IRIX | x3dna | |
| Modelling | |||||||
| 3D-DOCK | unknown checking | Web | Manual | 2, | GNU/Linux | N/A | |
| AutoDock | academic | Web | Manual | 2.4? | GNU/Linux IRIX | autodock | |
| CHARMM | proprietary | Web | Manual | 31b1, 30b1, 30 | GNU/Linux IRIX | charmm | |
| FTDock | FOSS | Web | Manual | 2, 1 | GNU/Linux | ftdock | |
| GROMACS | FOSS | Web | Manual | 3.2.1-1 | GNU/Linux | gromacs | |
| HEX | unknown checking | Web | Manual | 3.0 | GNU/Linux IRIX | hex | |
| MMTK | FOSS | Web | Manual | 2.0 | GNU/Linux IRIX | N/A | |
| NAMD | FOSS | Web | Manual | 2.6b1, 2.5b1, 2.4b2 | GNU/Linux IRIX | namd | |
| NAMOT | FOSS | Web | None | 2 | IRIX | namot2 | |
| OpenBabel | FOSS | Web | Manual | 2.0.2 | GNU/Linux | openbabel | |
| Quanta | proprietary | Web | Manual | 2006, | IRIX | quanta2000 | |
| SYBYL | proprietary | Web | Manual | 7.3, 7.1, 7.0, 6.7, 6.6 | GNU/Linux IRIX | sybyl | |
| UNICHEM | unknown checking | Web | Manual | 4.1, 5.0 | IRIX | unichem | |
| Visualization | |||||||
| BobScript | proprietary | Web | Manual | N/A | IRIX | bobscript | |
| CONSCRIPT | FOSS | Web | Manual | N/A | GNU/Linux IRIX | conscript | |
| DINO | unknown checking | Web | Manual | 0.8.4, 0.8.2 | GNU/Linux IRIX | dino | |
| GRASP | proprietary | Web | Manual | N/A | IRIX | grasp | |
| Kinemage | proprietary | Web | Manual | 5.93 | GNU/Linux IRIX | kinemage | |
| LIGPLOT | academic | Web | Manual | 4.1.1 | IRIX | ligplot | |
| MEAD | unknown checking | Web | Manual | 2.5 | GNU/Linux IRIX | mead | |
| MOLMOL | academic | Web | Manual | 2k.1 | GNU/Linux IRIX | molmol | |
| MOLSCRIPT | academic | Web | Manual | 2.1.2, 2.0.2, 202 | GNU/Linux IRIX | molscript | |
| MSMS | unknown checking | Web | Manual | 2.5.3 | GNU/Linux IRIX | msms | |
| NUCPLOT | academic | Web | Manual | 1.0 | GNU/Linux IRIX | nucplot | |
| POVScript | FOSS | Web | Manual | 2.1.1, 1.3_rc2 | GNU/Linux | povscript | |
| PROMOTIF | unknown checking | Web | Manual | 2.0 | IRIX | promotif | |
| PyMOL | FOSS | Web | Manual | 0.99rc1, 0.98, 0.97fc, 0.97 | GNU/Linux | pymol | |
| RASMOL | FOSS | Web | Manual | N/A | GNU/Linux | rasmol | |
| Raster3d | FOSS | Web | Manual | 2.6b, | GNU/Linux IRIX | raster3d | |
| Ribbons | unknown checking | Web | Manual | 3.15_opengl, 3.15, 3.14, 3.1 | GNU/Linux IRIX | ribbons | |
| Setor | unknown checking | Web | Manual | 4.14.19 | IRIX | setor | |
| Swiss-PdbViewer | proprietary | Web | Manual | 3.5 | GNU/Linux IRIX | spdbv | |
| TkRaster3D | FOSS | None | None | 2.5 | IRIX | tkraster3d | |
| TOPS | unknown checking | Web | Manual | N/A | GNU/Linux IRIX | tops | |
| VMD | FOSS | Web | Manual | 1.8b2, 1.7.1, 1.7, 1.6.1 | GNU/Linux IRIX | vmd | |
| Molecular Biology and Biochemistry | Sequence alignment | ||||||
| FAROUT | unknown checking | Web | None | 2000-11-15 | GNU/Linux IRIX | farout | |
| GeneMine | unknown checking | Web | None | 3 | GNU/Linux | genemine | |
| SeaView | unknown checking | Web | None | N/A | GNU/Linux IRIX | seaview | |
| Sequoia | unknown checking | Web | Manual | 0.99 | GNU/Linux IRIX | sequoia | |
| Sequence plotting | |||||||
| Artemis | FOSS | Web | Manual | 4 | GNU/Linux IRIX | artemis | |
| Belvu | unknown checking | Web | None | N/A | GNU/Linux IRIX | belvu | |
| BOXSHADE | FOSS | Web | Manual | 3.31c | GNU/Linux IRIX | boxshade | |
| Consensus | unknown checking | Web | Manual | 5.0, 4.1 | GNU/Linux | consensus | |
| ESPript | unknown checking | Web | Manual | 1.9 | GNU/Linux IRIX | espript | |
| Ultracentrifugation | |||||||
| Ultrascan | FOSS | Web | Manual | 4.1 | GNU/Linux IRIX | us | |