Department Home

qr-code info
  • X-ray Lab Home
  • Data Collection Queue
  • News Forum
  • Software List
  • Getting Started...
  • X-ray Lab Guides
  • X-ray Links
  • Calculations
  • Search
  • Internal use only:
  • Data Collection Queue Sign-up
  • E-mail list archives
  • Other:
  • Software
    File Transfer
  • Miscellaneous Links
  • Facility Manager
  • FOSS Software

    N.B. These pages are under almost continual re-construction! To stay current on the state of the software, subscribe to the X-rayLab email list.

    The old software pages are still available here, but may not be kept up to date.

    Click on a link below to see the software within that category


    1. All software
    2. Crystallography
    3. Miscellaneous
    4. Modelling
    5. Molecular Biology and Biochemistry

    Click on program name for more information

    ProgramLicense typeWeb pageManualVersionsOperating systems/prog/setup name
    Crystallography Data processing
    DPSFOSSWebManual2.0, 2, 1.31GNU/Linux IRIXdps
    MosflmFOSSWebManual6.2.3, 6.2.2, 6.11, 6.10, 6.1GNU/Linux IRIXmosflm
    Structure determination
    AMoReFOSSNoneManual9, 8, 7, 10, oldGNU/Linuxamore
    ARP/wARPFOSSWebManual6.1,GNU/Linux IRIXarp
    CCP4FOSSWebManual6.0.2, 6.0.1, 5.0.2, 5.0GNU/Linux IRIXccp4
    cctbxFOSSWebManual6.0.2, 6.0.1, 5.0.2, 5.0, 3.5GNU/Linuxccp4i
    ChoochFOSSWebManual5.0.1GNU/Linuxchooch
    MAIDFOSSWebManual27may05,GNU/Linux IRIXmaid
    MOLREPFOSSWebManual7.1, 7.0, 6.1GNU/Linux IRIXmolrep
    phaserFOSSWebManual2.1.1GNU/Linuxphaser
    Structure fitting
    CootFOSSWebManual0.1.3GNU/Linuxcoot
    Structure quality
    ProcheckFOSSWebManualN/AGNU/Linuxprocheck
    Miscellaneous Data Analysis
    PAWFOSSWebManual2.12/22GNU/Linux IRIXpaw
    Miscellaneous
    /prog/setupFOSSWebManual1.59GNU/Linux IRIX/prog/setup
    ProgPortsFOSSWebManual10, 16, 18, jediGNU/Linuxprogports
    Modelling Structural analysis
    APBSFOSSWebManual0.3.1GNU/Linux IRIXapbs
    Modelling
    FTDockFOSSWebManual2, 1GNU/Linuxftdock
    GROMACSFOSSWebManual3.2.1-1GNU/Linuxgromacs
    MMTKFOSSWebManual2.0GNU/Linux IRIXN/A
    NAMDFOSSWebManual2.6b1, 2.5b1, 2.4b2GNU/Linux IRIXnamd
    NAMOTFOSSWebNone2IRIXnamot2
    OpenBabelFOSSWebManual2.0.2GNU/Linuxopenbabel
    Visualization
    CONSCRIPTFOSSWebManualN/AGNU/Linux IRIXconscript
    POVScriptFOSSWebManual2.1.1, 1.3_rc2GNU/Linuxpovscript
    PyMOLFOSSWebManual0.99rc1, 0.98, 0.97fc, 0.97GNU/Linuxpymol
    RASMOLFOSSWebManualN/AGNU/Linuxrasmol
    Raster3dFOSSWebManual2.6b,GNU/Linux IRIXraster3d
    TkRaster3DFOSSNoneNone2.5IRIXtkraster3d
    VMDFOSSWebManual1.8b2, 1.7.1, 1.7, 1.6.1GNU/Linux IRIXvmd
    Molecular Biology and Biochemistry Sequence plotting
    ArtemisFOSSWebManual4GNU/Linux IRIXartemis
    BOXSHADEFOSSWebManual3.31cGNU/Linux IRIXboxshade
    Ultracentrifugation
    UltrascanFOSSWebManual4.1GNU/Linux IRIXus
    Johns Hopkins University School of Medicine | Department of Biophysics and Biophysical Chemistry
    Department Faculty | Biophysics Graduate Program Admissions Information | General Information
    Department Courses | Department Facilities | Department News | Home