_ feedback push
_ feedback disable,all,everything
# RENAME TO .pymolrc AND INSERT COMMANDS HERE

# use white background
set bg_rgb, 1 1 1

# set orthoscopic, rather than perspective as the default
set orthoscopic, 1

# set size of graphics window
#viewport 800, 600
viewport 1100, 900
#viewport 1280,1024

set hash_max, 170

# turn off auto zoom
set auto_zoom, 0

set cgo_line_radius, 0.05
set line_width, 2
set cgo_line_width, 2
set ribbon_radius, .2
set ribbon_width, 2
set ribbon_sampling, 1
set cartoon_smooth_loop, 0

set stick_radius, .2
set fog, 1.

# set spec_refl to 2. for bright reflections, .5 for dimmer
set spec_refl, 1.5
# set spec_power to 200 for tight reflections, 40 for broader
set spec_power, 100

# default to antialiased rendering (on or 1)
set antialias, on
# to set background to transparent for ray tracing, set the following off, or 0
set ray_opaque_background, on

# The following may not be necessary now as one can set the preferred
# color space see the "Display -> Color Space" menu item in the main GUI
#optimized rgb values for cmyk output:
set_color _dblue= [0.05 , 0.19 , 0.57]
set_color _blue=  [0.02 , 0.50 , 0.72]
set_color _mblue= [0.5  , 0.7  , 0.9 ]
set_color _lblue= [0.86 , 1.00 , 1.00]

set_color _green= [0.00 , 0.53 , 0.22]
set_color _lgreen=[0.50 , 0.78 , 0.50]

set_color _yellow=[0.95 , 0.78 , 0.00]

set_color _orange=[1.00 , 0.40 , 0.0 ]

# these are trivial
set_color _red=   [1.00 , 0.00 , 0.00]
set_color _mred=  [1.00 , 0.40 , 0.40]
set_color _lred=  [1.00 , 0.80 , 0.80]
set_color _vlred= [1.00 , 0.90 , 0.90]
set_color _white= [1.00 , 1.00 , 1.00]
set_color _vlgray=[0.95 , 0.95 , 0.95]
set_color _lgray= [0.90 , 0.90 , 0.90]
set_color _gray=  [0.70 , 0.70 , 0.70]
set_color _dgray= [0.50 , 0.50 , 0.50]
set_color _vdgray=[0.30 , 0.30 , 0.30]
set_color _black= [0.00 , 0.00 , 0.00]
##

set_color gold, [1.0, 0.8, 0.0]
set_color gold2, [0.90, 0.6, 0.0]
set_color lightblue, [0.6, 0.8, 1.0]
set_color lightgreen, [0.,1.0, 0.3]
set_color darkgreen, [0.,0.7,0.0]


# run some of my scripts (see http://adelie.biochem.queensu.ca/~rlc/work/pymol/ for these)
run c:\Program Files\DeLano Scientific\PyMOL\load_best.py
run c:\Program Files\DeLano Scientific\PyMOL\load_models.py
run c:\Program Files\DeLano Scientific\PyMOL\load_sep.py
run c:\Program Files\DeLano Scientific\PyMOL\load_list.py
run c:\Program Files\DeLano Scientific\PyMOL\load_files.py
run c:\Program Files\DeLano Scientific\PyMOL\color_b.py
run c:\Program Files\DeLano Scientific\PyMOL\stride_ss.py
run c:\Program Files\DeLano Scientific\PyMOL\color_by_restype.py
run c:\Program Files\DeLano Scientific\PyMOL\color_by_attype.py
#run c:\Program Files\DeLano Scientific\PyMOL\draw_symops_cctbx.py
#run c:\Program Files\DeLano Scientific\PyMOL\draw_cell.py
run c:\Program Files\DeLano Scientific\PyMOL\data2bfactor.py
run c:\Program Files\DeLano Scientific\PyMOL\make_polymer.py
run c:\Program Files\DeLano Scientific\PyMOL\colordist.py
run c:\Program Files\DeLano Scientific\PyMOL\make_pov.py
run c:\Program Files\DeLano Scientific\PyMOL\seq_select.py
run c:\Program Files\DeLano Scientific\PyMOL\build_seq.py
run c:\Program Files\DeLano Scientific\PyMOL\build_seq_v1.py
run c:\Program Files\DeLano Scientific\PyMOL\grepset.py

# END COMMANDS
_ feedback pop